PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234327.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 254aa MW: 28399.6 Da PI: 10.0961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234327.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	68	118	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h e+Er+RR+++ + + Lr+llP + ++K s ++ +Av+YIk+Lq XP_008234327.1 68 MMHRENERQRRQEMGTLHASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHLQ 118 68***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.37E-9	63	122	No hit	No description
SuperFamily	SSF47459	3.66E-12	64	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.97	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-9	68	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-8	69	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.002	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMFPLHQSKK LVFQTSSNPP QKHTISEDRI LGHAISTGKS RRRKLVAAFN YDMIDHNSND 60 HNKKKKMMMH RENERQRRQE MGTLHASLRS LLPLEFIKGK RSISDHMNEA VNYIKHLQSR 120 IKRLDAKRAE LKKCSNIMST TGTDHGATTG SSDGRSPSCL TVHPCCGGVQ IVISSRGFRS 180 TKDGLSLSFS ISRVLEVLLE QGLAVVSCVS SKGNDRLLHT IQCEVNDLES IDLSGLEQKL 240 AELVSPFSSR CISE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234327.1	0.0	PREDICTED: transcription factor bHLH36-like isoform X2
TrEMBL	M5X2S2	1e-130	M5X2S2_PRUPE; Uncharacterized protein (Fragment)
STRING	POPTR_0012s14080.1	2e-67	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	3e-47	bHLH family protein